All the code for the FIDES project, to infer force generation from cell meshes.
Publication: https://www.biorxiv.org/content/10.1101/2023.12.01.569682v4
Find the docker image and input data at https://doi.org/10.5281/zenodo.10223738
If you want to analyze new data, you need to start from SDT meshes of SDT-PiCS.
- Synthetic embryo generation
- Foam Force Inference implementation (Curved and Tangent)
- FIDES (Force Inference by Discrete Element method Simulation)
- Various utilities and plotting scripts