🐞 Bug Summary

bootstrap_db.py is expected to create alembic_version table in an empty db or use it to run correct alembic upgrades

🧩 Affected Component

Select the area of the project impacted:

• mcpgateway - API
• mcpgateway - UI (admin panel)
• mcpgateway.wrapper - stdio wrapper
• Federation or Transports
• CLI, Makefiles, or shell scripts
• Container setup (Docker/Podman/Compose)
• Other (explain below)
  Alembic migrations would break when alembic_version table is not present. It would try to start from the first script.

🤔 Expected Behavior

When server starts, it creates alembic_version table in empty db or applies correct migrations from the history in the table.