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Commits on Dec 12, 2025

• Fixed some service tests

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  npalacioescat

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  84509c5

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• Added missing import in R script

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  npalacioescat

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• Fixed error handling ncbi_tax_id when fields not in args

  npalacioescat

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  b92604b

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• Fixed handling ncbi_tax_id in fields argument

  npalacioescat

  committed
  6270fb9

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Commits on Dec 11, 2025

• Add a testcase for fields on the service level

  bbazsi41

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  ff09824

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• Fixed printing test summary

  npalacioescat

  committed
  cbd57f0

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• Fix the check countings in print_summary

  bbazsi41

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  faddea3

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• Fixes around test script

  npalacioescat

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  8d0664a

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• server testing R script: result checking functions

  deeenes

  committed
  e549e2b

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• Merge branch 'main' of github.com:saezlab/omnipath-server into deploy

  deeenes

  committed
  cc2f223

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• R script for server testing: first check case + improved messages

  deeenes

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  be98b50

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• Fixed printing summary with checks

  npalacioescat

  committed
  046a6c7

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• Add checkres function to the R tests

  bbazsi41

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  6393307

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• Removed trailing commas

  npalacioescat

  committed
  c05f300

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• Added few more test cases for interactions DB in R script for server

  npalacioescat

  committed
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Commits on Dec 5, 2025

• Added missing `import os` in legacy service

  npalacioescat

  committed
  3ed9003

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• Merge branch 'deploy' of github.com:saezlab/omnipath-server into deploy

  deeenes

  committed
  2627d61

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• `resources` query: add new line at the end of JSON

  deeenes

  committed
  f8c3c52

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• Removed type as default field in interactions

  npalacioescat

  committed
  f224f1e

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• kill entire process group

  deeenes

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  effb314

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• Fixed (hopefully) the killing of main process from child

  npalacioescat

  committed
  762b132

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• Revert "reverting all changes from last session to find the reason of deadlock in startup"

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  npalacioescat

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• reverting all changes from last session to find the reason of deadlock in startup

  deeenes

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Commits on Dec 3, 2025

• Increased worker timeout threshold

  npalacioescat

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  0e2d4ec

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• Reverted change to see what happens

  npalacioescat

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  3bf009b

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• More prints

  npalacioescat

  committed
  2a2235a

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• Added prints when killing process to debug

  npalacioescat

  committed
  7d68a1c

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• Kill group proces instead of subprocess (maybe?)

  npalacioescat

  committed
  b0f8612

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• Kill old process uses sigterm instead of plain 0

  npalacioescat

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  03f9935

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• Bump version: 0.1.1 → 0.1.2

  npalacioescat

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Commits on Nov 19, 2025

• Modified inconsistent argument when testing for secreted proteins in

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  npalacioescat

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  95be1e1

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• Added causality and topology to intercell database query handler

  npalacioescat

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  1979118

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• Reverted accidental removal of argument in test

  npalacioescat

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  0024b72

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• Merge branch 'main' of github.com:saezlab/omnipath-server

  npalacioescat

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  a4859e2

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• Swapped ProtMapper to DEPOD when testing for dephosphorylation in tests

  npalacioescat

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